List of publications

Total found: 98 records
Mathur V., Salomaki E., Wakeman K.C., Na I., Kwong W.K., Kolísko M., Keeling P. (2023) Reconstruction of plastid proteomes of apicomplexans and close relatives reveals the major evolutionary outcomes of cryptic plastids Molecular Biology and Evolution 40: msad002.
DOI: 10.1093/molbev/msad002
Nguyen L., Taerum S.J., Jasso-Selles D.E., Slamovits C.H., Silberman J., Gile G. (2023) True molecular phylogenetic position of the cockroach gut commensal Lophomonas blattarum (Lophomonadida, Parabasalia) Journal of Eukaryotic Microbiology 70: e12988.
DOI: 10.1111/jeu.12988
Obiol A., López-Escardó D., Salomaki E., Wisniewska M., Forn I., Sà E., Vaqué D., Kolísko M., Massana R. (2023) Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory Microbiome 11: 134.
DOI: 10.1186/s40168-023-01571-5
Uribe M., Brabec J., Chaparro-Gutiérrez J.J., Hermosilla C. (2023) Neglected zoonotic helminthiases in wild canids: new insights from South America Frontiers in Veterinary Science 10: 1235182.
DOI: 10.3389/fvets.2023.1235182
Cho A., Tikhonenkov D.V., Hehenberger E., Karnkowska A., Mylnikov A.P., Keeling P. (2022) Monophyly of diverse Bigyromonadea and their impact on phylogenomic relationships within stramenopiles Molecular Phylogenetics and Evolution 171: 107468.
DOI: 10.1016/j.ympev.2022.107468
Decelle J., Kayal E., Bigeard E., Gallet B., Bougoure J., Clode P., Schieber N., Templin R., Hehenberger E., Prensier G., Chevalier F., Schwab Y., Guillou L. (2022) Intracellular development and impact of a marine eukaryotic parasite on its zombified microalgal host The ISME Journal 16: 2348-2359.
DOI: 10.1038/s41396-022-01274-z
Lisnerová M., Martínek I., Alama Bermejo G., Bouberlová K., Schaeffner B., Nkabi N., Holzer A., Bartošová-Sojková P. (2022) An ancient alliance: Matching evolutionary patterns of cartilaginous fishes (Elasmobranchii) and chloromyxid parasites (Myxozoa) Infection Genetics and Evolution 103: 105346.
DOI: 10.1016/j.meegid.2022.105346
Vargová R., Hanousková P., Salamonová J., Žihala D., Silberman J., Eliáš M., Čepička I. (2022) Evidence for an independent hydrogenosome-to-mitosome transition in the CL3 lineage of fornicates Frontiers in Microbiology 13: 866459.
DOI: 10.3389/fmicb.2022.866459
Kuchta R., Kołodziej-Sobocińska M., Brabec J., Młocicki D., Salamatin R., Scholz T. (2021) Sparganosis (Spirometra) in Europe in the molecular era Clinical Infectious Diseases 72: 882–890.
DOI: 10.1093/cid/ciaa1036
Kyslík J., Kosakyan A., Nenarokov S., Holzer A., Fiala I. (2021) The myxozoan minicollagen gene repertoire was not simplified by the parasitic lifestyle: computational identification of a novel myxozoan minicollagen gene BMC Genomics 22: 198.
DOI: 10.1186/s12864-021-07515-3
Lax G., Kolísko M., Eglit Y., Lee W.J., Yubuki N., Karnkowska A., Leander B., Burger G., Keeling J., Simpson A. (2021) Multigene phylogenetics of euglenids based on single-cell transcriptomics of diverse phagotrophs Molecular Phylogenetics and Evolution 159: 107088.
DOI: 10.1016/j.ympev.2021.107088
Salas-Leiva D.E., Tromer E.C., Curtis B., Jerlström-Hultqvist J., Kolísko M., Yi Z., Salas-Leiva J.S., Gallot-Lavallée L., Williams S.K., Kops G., Archibald J. M., Simpson A., Roger A. (2021) Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist Nature Communications 12: 6003.
DOI: 10.1038/s41467-021-26077-2
Salomaki E., Terpis K.X., Rueckert S., Kotyk M., Varadínová Z.K., Čepička I., Lane C., Kolísko M. (2021) Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans BMC Biology 19: 77.
DOI: 10.1186/s12915-021-01007-2
Scholz T., Brabec J., Hrubá K., Jirků M. (2021) High species diversity of fish tapeworms in congeneric hosts in Africa: revision of Monobothrioides (Cestoda: Caryophyllidea), including description of two new species and molecular phylogeny Organisms Diversity and Evolution 21: 447–466.
DOI: 10.1007/s13127-021-00492-1
Scholz T., Waeschenbach A., Oros M., Brabec J., Littlewood D. (2021) Phylogenetic reconstruction of early diverging tapeworms (Cestoda: Caryophyllidea) reveals ancient radiations in vertebrate hosts and biogeographic regions International Journal for Parasitology 51: 263-277.
DOI: 10.1016/j.ijpara.2020.09.009
Singh R.A., Boscaro V., James E., Karnkowska A., Kolísko M., Gavelis G.S., Okamoto N., del Campo J., Fiorito R., Hehenberger E., Irwin N.A.T., Mathur V., Scheffrahn R., Keeling P. (2021) Characterization of new cristamonad species from kalotermitid termites including a novel genus, Runanympha Scientific Reports 11: 7270.
DOI: 10.1038/s41598-021-86645-w
Stairs C.W., Táborský P., Salomaki E., Kolísko M., Pánek T., Eme L., Hradilová M., Vlček Č., Jerlström-Hultqvist J., Roger A., Čepička I. (2021) Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes Current Biology 31: 5605-5612.e5.
DOI: 10.1016/j.cub.2021.10.010
Tice A.K., Žihala D., Pánek T., Jones R.E., Salomaki E., Nenarokov S., Burki F., Eliáš M., Eme L., Roger A., Rokas A., Shen X.X., Strassert J., Kolísko M., Brown M.M. (2021) PhyloFisher: A phylogenomic package for resolving eukaryotic relationships PLoS Biology 19: e3001365.
DOI: 10.1371/journal.pbio.3001365
Uribe M., Payán E., Brabec J., Vélez J., Taubert A., Chaparro-Gutiérrez J.J., Hermosilla C. (2021) Intestinal Parasites of Neotropical Wild Jaguars, Pumas, Ocelots, and Jaguarundis in Colombia: Old Friends Brought Back from Oblivion and New Insights Pathogens 10: 822.
DOI: 10.3390/pathogens10070822
Alama Bermejo G., Myer E., Atkinson S.D., Holzer A., Wisniewska M., Kolísko M., Bartholomew J. (2020) Transcriptome-wide comparisons and virulence gene polymorphisms of host-associated genotypes of the cnidarian parasite Ceratonova shasta in salmonids. Genome Biology and Evolution 12: 1258–1276.
DOI: 10.1093/gbe/evaa109

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