List of publications

Total found: 91 records
Becker B.M., Banson I., Walker J.M., Deshwal A., Brown M.W., Silberman J. (2024) Isolation of Naegleria lustrarea n. sp. (Excavata, Discoba, Heterolobosea) from the feces of Ambystoma annulatum (Ringed Salamander) in Northwest Arkansas Journal of Eukaryotic Microbiology 9: e13031.
DOI: 10.1111/jeu.13031
Cooney E.C., Holt C.C., Hehenberger E., Adams J.A., Leander B., Keeling P. (2024) Investigation of heterotrophs reveals new insights in dinoflagellate evolution Molecular Phylogenetics and Evolution 196: 108086.
DOI: 10.1016/j.ympev.2024.108086
del Campo J., Carlos-Oliveira M., Čepička I., Hehenberger E., Horák A., Karnkowska A., Kolísko M., Lara E., Lukeš J., Pánek T., Piwosz K., Richter D.J., Škaloud P., Šuťák R., Tachezy J., Hampl V. (2024) The protist cultural renaissance Trends in Microbiology 32: 128-131.
DOI: 10.1016/j.tim.2023.11.010

Documents to download:
delCampo_2024_TrendsParasitol (pdf)
Jones R.E., Tice A.K., Eliáš M., Eme L., Kolísko M., Nenarokov S., Pánek T., Rokas A., Salomaki E., Strassert J., Shen X.X., Žihala D., Brown M.W. (2024) Create, analyze, and visualize phylogenomic datasets using PhyloFisher Current Protocols 4: e969.
DOI: 10.1002/cpz1.969
Lukeš J., Čepička I., Kolísko M. (2024) Evolution: No end in sight for novel incredible (heterotrophic) protists Current Biology 34: R53–R74.
DOI: 10.1016/j.cub.2023.10.065

Documents to download:
Lukes_2024_CurrBiol (pdf)
Rotterová J., Pánek T., Salomaki E., Kotyk M., Táborský P., Kolísko M., Čepička I. (2024) Single cell transcriptomics reveals UAR codon reassignment in Palmarella salina (Metopida, Armophorea) and confirms Armophorida belongs to APM clade Molecular Phylogenetics and Evolution 191: 107991.
DOI: 10.1016/j.ympev.2023.107991
Vodrážková M., Šetlíková I., Navrátil J., Vodrážka P., Moos M., Berec M. (2024) The hidden impact of an invasive predator: Chronic stress in common frog tadpoles Global Ecology and Conservation 50: e02835.
DOI: 10.1016/j.gecco.2024.e02835
Brabec J., Rochat E.C., Knudsen R., Scholz T., Blasco-Costa I. (2023) Mining various genomic resources to resolve old alpha-taxonomy questions: a test of the species hypothesis of the Proteocephalus longicollis species complex (Cestoda: Platyhelminthes) from salmonid fishes (Cestoda: Platyhelminthes). International Journal for Parasitology 53: 197–205.
DOI: 10.1016/j.ijpara.2022.12.005
Hehenberger E., Boscaro V., James E., Hirakawa Y., Trznadel M., Mtawali M., Fiorito R., del Campo J., Karnkowska A., Kolísko M., Irwin N.A.T., Mathur V., Scheffrahn R., Keeling P. (2023) New Parabasalia symbionts Snyderella spp. and Daimonympha gen. nov. from South American Rugitermes termites and the parallel evolution of a cell with a rotating "head" Journal of Eukaryotic Microbiology 70: e12987.
DOI: 10.1111/jeu.12987
Hehenberger E., Guo J., Wilken S., Hoadley K., Sudek L., Poirier C., Dannebaum R., Susko E., Worden A. (2023) Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias Molecular Biology and Evolution 40: msad251.
DOI: 10.1093/molbev/msad251
Holt C.C., Hehenberger E., Tikhonenkov D.V., Jacko-Reynolds V.K.L., Okamoto N., Cooney E.C., Irwin N.A.T., Keeling P. (2023) Multiple parallel origins of parasitic Marine Alveolates Nature Communications 14: 7049.
DOI: 10.1038/s41467-023-42807-0
Kachale A., Pavliková Z., Nenarokova A., Roithová A., Durante I., Miletínová P., Záhonová K., Nenarokov S., Votýpka J., Horáková E., Ross R.L., Yurchenko V., Beznosková P., Paris Z., Valášek L.S., Lukeš J. (2023) Short tRNA anticodon stem and mutant eRF1 allow stop codon reassignment Nature 613: 751–758.
DOI: 10.1038/s41586-022-05584-2

Documents to download:
Kachale_2023_Nature (pdf)
Marick J., Brabec J., Choudhury A., Scholz T., Ash A. (2023) The evolution of an ancient tapeworm lineage in its catfish hosts: vicariance, dispersal and diversification in Gangesiinae (Cestoda: Proteocephalidae) Zoological Journal of the Linnean Society 198: 509–533.
DOI: 10.1093/zoolinnean/zlac098
Mathur V., Salomaki E., Wakeman K.C., Na I., Kwong W.K., Kolísko M., Keeling P. (2023) Reconstruction of plastid proteomes of apicomplexans and close relatives reveals the major evolutionary outcomes of cryptic plastids Molecular Biology and Evolution 40: msad002.
DOI: 10.1093/molbev/msad002
Nguyen L., Taerum S.J., Jasso-Selles D.E., Slamovits C.H., Silberman J., Gile G. (2023) True molecular phylogenetic position of the cockroach gut commensal Lophomonas blattarum (Lophomonadida, Parabasalia) Journal of Eukaryotic Microbiology 70: e12988.
DOI: 10.1111/jeu.12988
Obiol A., López-Escardó D., Salomaki E., Wisniewska M., Forn I., Sà E., Vaqué D., Kolísko M., Massana R. (2023) Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory Microbiome 11: 134.
DOI: 10.1186/s40168-023-01571-5
Uribe M., Brabec J., Chaparro-Gutiérrez J.J., Hermosilla C. (2023) Neglected zoonotic helminthiases in wild canids: new insights from South America Frontiers in Veterinary Science 10: 1235182.
DOI: 10.3389/fvets.2023.1235182
Cho A., Tikhonenkov D.V., Hehenberger E., Karnkowska A., Mylnikov A.P., Keeling P. (2022) Monophyly of diverse Bigyromonadea and their impact on phylogenomic relationships within stramenopiles Molecular Phylogenetics and Evolution 171: 107468.
DOI: 10.1016/j.ympev.2022.107468
Decelle J., Kayal E., Bigeard E., Gallet B., Bougoure J., Clode P., Schieber N., Templin R., Hehenberger E., Prensier G., Chevalier F., Schwab Y., Guillou L. (2022) Intracellular development and impact of a marine eukaryotic parasite on its zombified microalgal host The ISME Journal 16: 2348-2359.
DOI: 10.1038/s41396-022-01274-z
Lisnerová M., Martínek I., Alama Bermejo G., Bouberlová K., Schaeffner B., Nkabi N., Holzer A., Bartošová-Sojková P. (2022) An ancient alliance: Matching evolutionary patterns of cartilaginous fishes (Elasmobranchii) and chloromyxid parasites (Myxozoa) Infection Genetics and Evolution 103: 105346.
DOI: 10.1016/j.meegid.2022.105346

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