- Evolutionary Parasitology (Martin Kolísko)
- Molecular Parasitology (Alena Panicucci Zíková)
- Veterinary and Medical Parasitology (Martin Kváč)
- Disease Vectors and Pathogens (Jan Perner)
- Aquatic Parasitology (Ivan Fiala)
- Section of Supporting Facilities
- Folia Parasitologica, international journal
- Laboratory of Electron Microscopy
